Package: QsRutils
Type: Package
Title: R Functions Useful for Community Ecology
Version: 0.2.1.9000
Authors@R: person("John", "Quensen", email = "quensenj@msu.edu",
    role = c("aut", "cre", "cph"))
Description: A collection of utility functions for community ecology
        analyses, with emphasis on workflows using the 'phyloseq' and
        'vegan' packages. Includes functions for normalizing OTU
        tables, computing alpha diversity via rarefaction (using a fast
        C++ implementation), differential abundance comparisons with
        compact letter displays, primer checking for amplicon
        sequencing, plotting QIIME 2/DADA2 generated transition stats
        and miscellaneous helpers for ordination plots and taxonomic
        name formatting.
Depends: R (>= 4.1.0)
Imports: agricolae, ape, Biostrings, dada2, data.table, dplyr, ggplot2,
        insect, multcompView, magrittr, phyloseq, Rcpp, readr, scales,
        ShortRead, SRS, stringr, tibble, vegan (>= 2.4-6)
LinkingTo: Rcpp
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests: dunn.test, knitr, rmarkdown, reshape2, testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/jfq3/QsRutils
BugReports: https://github.com/jfq3/QsRutils/issues
Config/testthat/edition: 3
Additional_repositories: https://bioconductor.org/packages/release/bioc
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://jfq3.r-universe.dev
Date/Publication: 2026-05-18 21:45:58 UTC
RemoteUrl: https://github.com/jfq3/qsrutils
RemoteRef: HEAD
RemoteSha: db324f1d87983c5e01be27a6537664afb5c34178
NeedsCompilation: yes
Packaged: 2026-07-13 07:35:48 UTC; root
Author: John Quensen [aut, cre, cph]
Maintainer: John Quensen <quensenj@msu.edu>