{ "_id": "6a1025fbacfb0bcc41c8f0d8", "Package": "speedytax", "Title": "Rapidly Import Classifier Results into 'phyloseq'", "Version": "1.0.4.9000", "Authors@R": "person(\"John\", \"Quensen\", email = \"quensenj@msu.edu\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7669-1595\"))", "Description": "Import classification results from the 'RDP Classifier'\n(Ribosomal Database Project),' 'USEARCH sintax,' 'vsearch\nsintax' and the 'QIIME2' (Quantitative Insights into Microbial\nEcology) classifiers into 'phyloseq' tax_table objects.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.1", "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev zlib1g-dev", "Repository": "https://jfq3.r-universe.dev", "Date/Publication": "2024-05-14 22:13:56 UTC", "RemoteUrl": "https://github.com/jfq3/speedytax", "RemoteRef": "HEAD", "RemoteSha": "dc3168e77550f43c4a022518497753e719f2b07a", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-13 09:13:44 UTC", "User": "root" }, "Author": "John Quensen [aut, cre, cph] (ORCID:\n)", "Maintainer": "John Quensen ", "MD5sum": "e00973583d94c23c47e377a356ced11b", "_user": "jfq3", "_type": "src", "_file": "speedytax_1.0.4.9000.tar.gz", "_fileid": "afeea87ea7f38ee3fb9de9b58a6e92a57328ce497337a153a46f7038e150fb43", "_filesize": 97584, "_sha256": "afeea87ea7f38ee3fb9de9b58a6e92a57328ce497337a153a46f7038e150fb43", "_created": "2026-05-13T09:13:44.000Z", "_published": "2026-05-22T09:46:35.407Z", "_distro": "noble", "_jobs": [ { "job": 77355423241, "time": 197, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "6966170861" }, { "job": 77355423281, "time": 213, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6966177755" }, { "job": 77355423385, "time": 220, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6966179596" }, { "job": 77355423566, "time": 218, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6966181163" }, { "job": 77355423482, "time": 142, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6966150138" }, { "job": 77355423353, "time": 385, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "6966239902" }, { "job": 77355423312, "time": 269, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6966197569" }, { "job": 77355423381, "time": 400, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6966246360" }, { "job": 77355423355, "time": 219, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6966096377" }, { "job": 77355422584, "time": 130, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157595132" }, { "job": 77355423074, "time": 212, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6966176636" }, { "job": 77355423174, "time": 197, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6966172097" }, { "job": 77355423582, "time": 194, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6966169985" } ], "_buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/jfq3/speedytax", "_commit": { "id": "dc3168e77550f43c4a022518497753e719f2b07a", "author": "John Quensen ", "committer": "John Quensen ", "message": "Change RCMD workflow to check-standard\n", "time": 1715724836 }, "_maintainer": { "name": "John Quensen", "email": "quensenj@msu.edu", "login": "jfq3", "uuid": 8404415, "orcid": "0000-0002-7669-1595" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "dplyr", "role": "Imports" }, { "package": "phyloseq", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" } ], "_owner": "jfq3", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jfq3", "count": 150, "uuid": 8404415 } ], "_userbio": { "uuid": 8404415, "type": "user", "name": "jfq3" }, "_downloads": { "count": 172, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/speedytax" }, "_devurl": "https://github.com/jfq3/speedytax", "_searchresults": 7, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/speedytax.html", "manual.pdf" ], "_homeurl": "https://github.com/jfq3/speedytax", "_realowner": "jfq3", "_cranurl": true, "_releases": [ { "version": "1.0.3", "date": "2024-01-18" }, { "version": "1.0.4", "date": "2024-05-14" } ], "_exports": [ "import_qiime2_tax_table", "import_rdp_tax_table", "import_sintax_tax_table", "read_tax_example", "simple_cap" ], "_help": [ { "page": "import_qiime2_tax_table", "title": "Import QIIME2 Classification Table", "topics": [ "import_qiime2_tax_table" ] }, { "page": "import_rdp_tax_table", "title": "Import RDP Classifier Taxonomy Table", "topics": [ "import_rdp_tax_table" ] }, { "page": "import_sintax_tax_table", "title": "Import SINTAX Taxonomy Table", "topics": [ "import_sintax_tax_table" ] }, { "page": "read_tax_example", "title": "Get path to example taxonomy files", "topics": [ "read_tax_example" ] }, { "page": "simple_cap", "title": "Simple Capitalization", "topics": [ "simple_cap" ] } ], "_readme": "https://github.com/jfq3/speedytax/raw/HEAD/README.md", "_rundeps": [ "ade4", "ape", "Biobase", "BiocGenerics", "biomformat", "Biostrings", "cli", "cluster", "codetools", "cpp11", "crayon", "data.table", "digest", "dplyr", "farver", "foreach", "generics", "ggplot2", "glue", "gtable", "igraph", "IRanges", "isoband", "iterators", "jsonlite", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "mgcv", "multtest", "nlme", "permute", "phyloseq", "pillar", "pixmap", "pkgconfig", "plyr", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "reshape2", "rlang", "S4Vectors", "S7", "scales", "Seqinfo", "sp", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "vegan", "viridisLite", "withr", "XVector" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "speedytax", "_universes": [ "jfq3" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.4.9000", "date": "2026-05-13T09:16:16.000Z", "distro": "noble", "arch": "aarch64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "07df5c0759368b5a2a3f26c7c7e805467d951cd70cc9c09f327026cfdf19da89", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.7.0", "os": "linux", "version": "1.0.4.9000", "date": "2026-05-13T09:16:24.000Z", "distro": "noble", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "a10a4f9ec4009411137187fa013c1e7f1b83d138eb9b1a027a4e17e5fe3c302c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "linux", "version": "1.0.4.9000", "date": "2026-05-13T09:16:35.000Z", "distro": "noble", "arch": "aarch64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "8abf9eb82e2e24fe06f3f615a6571e93b8f5c8064dc83ff1132e1fa2dff03e95", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "linux", "version": "1.0.4.9000", "date": "2026-05-13T09:16:29.000Z", "distro": "noble", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "a30f4dd15cb964e762f69d8d31f2a8ba13ee2bcc711b91b7d7912a5dfd20b45c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.5.3", "os": "mac", "version": "1.0.4.9000", "date": "2026-05-13T09:15:36.000Z", "arch": "aarch64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "9af8c7360fcaa70539fd2ab2a6975326a61792af270a3cc47c023b833ae3a6bd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.5.3", "os": "mac", "version": "1.0.4.9000", "date": "2026-05-13T09:17:34.000Z", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "56600a6ae9b62e6eac963f54f012a63d42f1b25d18997043f0a92c7f0497dfee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "mac", "version": "1.0.4.9000", "date": "2026-05-13T09:16:28.000Z", "arch": "aarch64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "b5a6de30d9e09e8dc1928b86061c11abe8c4bb2ee71663f4a1b551c7d159916c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "mac", "version": "1.0.4.9000", "date": "2026-05-13T09:18:14.000Z", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "189a0afc8b8f6fa1bf46efbc9a5491089620e3e84d50305e2e7ea57508461521", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.7.0", "os": "win", "version": "1.0.4.9000", "date": "2026-05-13T09:15:32.000Z", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "f58734a61750e3c39650acfab1f6b3c4ce0609c6a2c3a8602f6948890bed5961", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.5.3", "os": "win", "version": "1.0.4.9000", "date": "2026-05-13T09:15:40.000Z", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "2e59150634ab3016222dfe5c1556515a1d36df572cb42898be94f07dec8b6c14", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "win", "version": "1.0.4.9000", "date": "2026-05-13T09:15:29.000Z", "arch": "x86_64", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "2597493b3ab42d2706a85ffa71eb4479bb0b0c0a5338ae003d22ff6ece57ae1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.4.9000", "date": "2026-05-22T09:46:01.000Z", "arch": "emscripten", "commit": "dc3168e77550f43c4a022518497753e719f2b07a", "fileid": "6d30c973b387c4ef268898cb4956d15814da42832c6c93594137081798c9c23c", "status": "success", "buildurl": "https://github.com/r-universe/jfq3/actions/runs/25789630647" } ] }