Package: speedytax 1.0.4.9000

speedytax: Rapidly Import Classifier Results into 'phyloseq'

Import classification results from the 'RDP Classifier' (Ribosomal Database Project),' 'USEARCH sintax,' 'vsearch sintax' and the 'QIIME2' (Quantitative Insights into Microbial Ecology) classifiers into 'phyloseq' tax_table objects.

Authors:John Quensen [aut, cre, cph]

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speedytax.pdf |speedytax.html✨
speedytax/json (API)
NEWS

# Install 'speedytax' in R:
install.packages('speedytax', repos = c('https://jfq3.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jfq3/speedytax/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

2.70 score 7 scripts 180 downloads 5 exports 77 dependencies

Last updated 10 months agofrom:dc3168e775. Checks:8 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-win-x86_64NOTEMar 10 2025
R-4.5-mac-x86_64NOTEMar 10 2025
R-4.5-mac-aarch64NOTEMar 10 2025
R-4.5-linux-x86_64NOTEMar 10 2025
R-4.4-win-x86_64OKMar 10 2025
R-4.4-mac-x86_64OKMar 10 2025
R-4.4-mac-aarch64OKMar 10 2025
R-4.4-linux-x86_64OKMar 10 2025
R-4.3-win-x86_64OKMar 10 2025
R-4.3-mac-x86_64OKMar 10 2025
R-4.3-mac-aarch64OKMar 10 2025

Exports:import_qiime2_tax_tableimport_rdp_tax_tableimport_sintax_tax_tableread_tax_examplesimple_cap

Dependencies:ade4apeaskpassBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscolorspacecpp11crayoncurldata.tabledigestdplyrfansifarverforeachgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemulttestmunsellnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpurrrR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4VectorsscalesspstringistringrsurvivalsystibbletidyrtidyselectUCSC.utilsutf8vctrsveganviridisLitewithrXVector