Package: speedytax 1.0.4.9000

speedytax: Rapidly Import Classifier Results into 'phyloseq'

Import classification results from the 'RDP Classifier' (Ribosomal Database Project),' 'USEARCH sintax,' 'vsearch sintax' and the 'QIIME2' (Quantitative Insights into Microbial Ecology) classifiers into 'phyloseq' tax_table objects.

Authors:John Quensen [aut, cre, cph]

speedytax_1.0.4.9000.tar.gz
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speedytax_1.0.4.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
speedytax/json (API)

# Install 'speedytax' in R:
install.packages('speedytax', repos = c('https://jfq3.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jfq3/speedytax/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

2.70 score 7 scripts 241 downloads 5 exports 64 dependencies

Last updated from:dc3168e775. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK208
linux-devel-x86_64OK224
source / vignettesOK278
linux-release-arm64OK258
linux-release-x86_64OK230
macos-release-arm64OK171
macos-release-x86_64OK291
macos-oldrel-arm64OK194
macos-oldrel-x86_64OK347
windows-develOK227
windows-releaseOK193
windows-oldrelOK220
wasm-releaseOK146

Exports:import_qiime2_tax_tableimport_rdp_tax_tableimport_sintax_tax_tableread_tax_examplesimple_cap

Dependencies:ade4apeBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscpp11crayondata.tabledigestdplyrfarverforeachgenericsggplot2gluegtableigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmulttestnlmepermutephyloseqpillarpixmappkgconfigplyrpurrrR6RColorBrewerRcppRcppArmadilloreshape2rlangS4VectorsS7scalesSeqinfospstringistringrsurvivaltibbletidyrtidyselectutf8vctrsveganviridisLitewithrXVector