Package: speedytax 1.0.4.9000
speedytax: Rapidly Import Classifier Results into 'phyloseq'
Import classification results from the 'RDP Classifier' (Ribosomal Database Project),' 'USEARCH sintax,' 'vsearch sintax' and the 'QIIME2' (Quantitative Insights into Microbial Ecology) classifiers into 'phyloseq' tax_table objects.
Authors:
speedytax_1.0.4.9000.tar.gz
speedytax_1.0.4.9000.zip(r-4.5)speedytax_1.0.4.9000.zip(r-4.4)speedytax_1.0.4.9000.zip(r-4.3)
speedytax_1.0.4.9000.tgz(r-4.4-x86_64)speedytax_1.0.4.9000.tgz(r-4.4-arm64)speedytax_1.0.4.9000.tgz(r-4.3-x86_64)speedytax_1.0.4.9000.tgz(r-4.3-arm64)
speedytax_1.0.4.9000.tar.gz(r-4.5-noble)speedytax_1.0.4.9000.tar.gz(r-4.4-noble)
speedytax_1.0.4.9000.tgz(r-4.4-emscripten)speedytax_1.0.4.9000.tgz(r-4.3-emscripten)
speedytax.pdf |speedytax.html✨
speedytax/json (API)
NEWS
| # Install 'speedytax' in R: |
| install.packages('speedytax', repos = c('https://jfq3.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jfq3/speedytax/issues
Last updated 6 months agofrom:dc3168e775. Checks:OK: 8 WARNING: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 10 2024 |
| R-4.5-win-x86_64 | OK | Nov 10 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 10 2024 |
| R-4.4-win-x86_64 | OK | Nov 10 2024 |
| R-4.4-mac-x86_64 | OK | Nov 10 2024 |
| R-4.4-mac-aarch64 | OK | Nov 10 2024 |
| R-4.3-win-x86_64 | OK | Nov 10 2024 |
| R-4.3-mac-x86_64 | OK | Nov 10 2024 |
| R-4.3-mac-aarch64 | OK | Nov 10 2024 |
Exports:import_qiime2_tax_tableimport_rdp_tax_tableimport_sintax_tax_tableread_tax_examplesimple_cap
Dependencies:ade4apeaskpassBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscolorspacecpp11crayoncurldata.tabledigestdplyrfansifarverforeachgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemulttestmunsellnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpurrrR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4VectorsscalesspstringistringrsurvivalsystibbletidyrtidyselectUCSC.utilsutf8vctrsveganviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Import QIIME2 Classification Table | import_qiime2_tax_table |
| Import RDP Classifier Taxonomy Table | import_rdp_tax_table |
| Import SINTAX Taxonomy Table | import_sintax_tax_table |
| Get path to example taxonomy files | read_tax_example |
| Simple Capitalization | simple_cap |
